| CPT–JNB | Cape Town – Johannesburg | 1,944 |
| DUR–JNB | Durban – Johannesburg | 1,102 |
| JNB–PLZ | Johannesburg – Gqeberha (Port Elizabeth) | 424 |
| HRE–JNB | Harare – Johannesburg | 337 |
| GRJ–JNB | George – Johannesburg | 242 |
| JNB–NBO | Johannesburg – Nairobi | 222 |
| GBE–JNB | Gaborone – Johannesburg | 166 |
| CPT–PLZ | Cape Town – Gqeberha (Port Elizabeth) | 163 |
| ELS–JNB | East London – Johannesburg | 159 |
| JNB–WDH | Johannesburg – Windhoek | 152 |
| JNB–MPM | Johannesburg – Maputo | 137 |
| JNB–VFA | Johannesburg – Victoria Falls | 128 |
| CPT–HDS | Cape Town – Hoedspruit | 123 |
| CPT–MQP | Cape Town – Mbombela | 118 |
| JNB–LUN | Johannesburg – Lusaka | 116 |
| DAR–JNB | Dar es Salaam – Johannesburg | 99 |
| HDS–JNB | Hoedspruit – Johannesburg | 91 |
| BFN–JNB | Bloemfontein – Johannesburg | 90 |
| CPT–GRJ | Cape Town – George | 86 |
| JNB–NBJ | Johannesburg – Luanda (Ícolo e Bengo) | 79 |
| CPT–WDH | Cape Town – Windhoek | 78 |
| BFN–CPT | Bloemfontein – Cape Town | 62 |
| BUQ–JNB | Bulawayo – Johannesburg | 61 |
| JNB–PZB | Johannesburg – Pietermaritzburg | 53 |
| FBM–JNB | Lubumbashi – Johannesburg | 52 |
| JNB–WVB | Johannesburg – Walvis Bay(Rooikop) | 52 |
| JNB–KIM | Johannesburg – Kimberley | 50 |
| CPT–SZK | Cape Town – Skukuza | 44 |
| CPT–MRU | Cape Town – Plaine Magnien | 43 |
| CPT–VFA | Cape Town – Victoria Falls | 43 |
| CPT–HRE | Cape Town – Harare | 43 |
| JNB–MUB | Johannesburg – Maun | 39 |
| JNB–SHO | Johannesburg – Mpaka | 38 |
| JNB–SZK | Johannesburg – Skukuza | 37 |
| JNB–ZNZ | Johannesburg – Zanzibar | 33 |
| CPT–KIM | Cape Town – Kimberley | 32 |
| JNB–LLW | Johannesburg – Lumbadzi | 29 |
| CPT–MUB | Cape Town – Maun | 28 |
| JNB–RCB | Johannesburg – Richards Bay | 25 |
| JNB–MQP | Johannesburg – Mbombela | 23 |
| CPT–GBE | Cape Town – Gaborone | 23 |
| JNB–NLA | Johannesburg – Ndola | 22 |
| CPT–UTN | Cape Town – Upington | 19 |
| CPT–MPM | Cape Town – Maputo | 18 |
| JNB–TNR | Johannesburg – Antananarivo | 17 |
| CPT–WVB | Cape Town – Walvis Bay(Rooikop) | 12 |
| BBK–JNB | Kasane – Johannesburg | 12 |
| JNB–LVI | Johannesburg – Livingstone | 11 |
| JNB–MSU | Johannesburg – Maseru(Mazenod) | 8 |
| JNB–MNC | Johannesburg – Nacala | 6 |
| JNB–VNX | Johannesburg – Vilanculo | 4 |
| JNB–POL | Johannesburg – Pemba | 4 |
| HLA–JNB | Johannesburg – Johannesburg | 3 |
| JNB–NOS | Johannesburg – Nosy Be | 2 |
| JNB–UTT | Johannesburg – Mthatha | 2 |
| AAM–CPTonce | AAM – Cape Town | 1 |
| CPT–ZNZonce | Cape Town – Zanzibar | 1 |
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